Journal of Interferon & Cytokine Research
Tristetraprolin Regulates Interleukin-6 Expression Through p38 MAPK-Dependent Affinity Changes with mRNA 3′ Untranslated Region
To cite this article:
Wenpu Zhao, Min Liu, Nisha J. D'Silva, and Keith L. Kirkwood. Journal of Interferon & Cytokine Research. August 2011, 31(8): 629-637. https://doi.org/10.1089/jir.2010.0154
Published in Volume: 31 Issue 8: August 8, 2011
Online Ahead of Print: April 3, 2011
Accepted 17 February 2011
Tristetraprolin (TTP) is a well-characterized, zinc finger-containing, RNA-binding protein. TTP targets tumor necrosis factor α for degradation via the 3′ untranslated region (3′UTR). Although AU-rich elements (AREs) in the 3′UTR of interleukin-6 (IL-6) mRNA dictate mRNA degradation, the role of TTP in the post-transcriptional regulation of IL-6 gene expression is unclear. Here we used TTP-deficient mice to test the hypothesis that IL-6 expression is influenced by TTP. Genetic and siRNA-mediated knockdown of TTP resulted in increased IL-6 production and overexpression of TTP had the reverse effect. IL-6 and tumor necrosis factor α production were elevated after injection of IL-1β in TTP-deficient mice. Further, embryonic fibroblasts from these mice (mouse embryonic fibroblasts) exhibited greater IL-6 mRNA expression and longer half-life than wild-type mouse embryonic fibroblasts. Overexpression of TTP reduced IL-6 3′UTR luciferase reporter activity in an ARE-dependent manner. Proximal and distal regions of the 3′UTR acted synergistically to produce the full repression of TTP. Mutation-based luciferase assays show that ARE2, ARE3, and ARE4 are required for TTP-mediated repression. The constitutively activated p38-MK2 pathway abrogated TTP-mediated repression of IL-6 3′UTR reporter activity. RNA immunoprecipitation assay indicated that the deficiency of p38α resulted in the increased affinity of TTP to IL-6 mRNA. Taken together, we propose that TTP downregulates IL-6 gene expression at the post-transcriptional level by targeting ARE elements in the 3′UTR region.
IL-6 is a multifunctional cytokine produced by a vast variety of cell types, including lymphocytes, macrophages, fibroblasts, synovial cells, endothelial cells, glial cells, and keratinocytes. IL-6 expression is induced by a variety of stimuli, including IL-1, TNF, platelet-derived growth factor, and lipopolysaccaride. There is significant evidence that IL-6 may play an important role in various diseases, including inflammation and malignancies (Nishimoto 2010), including evidence that IL-6 is constitutively overexpressed in synovial tissues of rheumatoid patients (Hirano and others 2001). The role of IL-6 in human malignancy is most clearly established in multiple myeloma (Yoshio-Hoshino and others 2007; Adachi and others 2008). Monoclonal antibodies enhance the effectiveness of chemotherapy in this disease (Kastritis and others 2009). There is also in vitro evidence that IL-6 can act as an autocrine growth factor in a number of human epithelial malignancies, including renal, lung, and prostate cancer (Waldner and Neurath 2008; Kasuga and others 2001). To clarify the mechanism involved in the abnormal expression of IL-6, it is important to investigate the mechanism of IL-6 gene expression under physiological conditions.
An adenine and uridine (AU)-rich element (ARE) in the 3′UTR of cytokine transcripts is an important determinant of post-transcriptional mRNA control. A hallmark of AREs is the pentamer AUUUA that occurs either alone or clustered. TNFα, GM-CSF, and IL-3 AREs are typical class II AREs with a core AUUUA motif cluster (Khabar 2005, 2007, 2010). The AREs of c-myc and c-fos are prototypes of class I, containing 1 to 3 scattered copies of the AUUUA motif, whereas another group of cytokine transcripts including IL-2, IL-4, and IL-6 contain class I–like AREs. This fact is highlighted in the IL-6 transcripts that contain 5 AUUUA pentamers where none are clustered together.
In recent years, significant information has accumulated regarding the role of 3′UTR of proinflammatory genes as targets of mitogen-activated protein kinase (MAPK) p38 pathway, and many of the effects appear to be mediated by its substrate, MAPK-activated protein kinase 2 (MK2) (Kotlyarov and Gaestel 2002; Stoecklin and others 2004; Sandler and Stoecklin 2008). It has been shown that p38 MAPK/MK2 cascade is involved in regulating mRNA stability via 3′-UTRs of TNFα, IL-8, GM-CSF, COX-2, and VEGF mRNA (Sandler and Stoecklin 2008). In macrophages the 3′UTR of IL-6 is the downstream target of MK2, which is an essential component of the mechanism that regulates mRNA stability. For the IL-1β-induced IL-6 biosynthesis, the involvement of p38 in vivo at the post-transcriptional level has only recently been explored (Patil and others 2004; Zhao and others 2008).
The mechanism by which TNFα mRNA is targeted by TTP has been intensely studied (Lai and others 1999; Rigby and others 2005). However, the role of TTP in IL-6 regulation has not been well studied since the TTP-null mouse does not exhibit spontaneously elevated levels of IL-6. The role of TTP in post-transcriptional regulation of IL-6 was the focus of the present study. Our data support the idea that IL-6 mRNA is highly expressed in IL-1β-stimulated, TTP-deficient mouse embryonic fibroblasts (MEFs), and has a longer half-life than wild-type MEFs through a mechanism that requires multiple AREs within the 3′UTR. This occurs in a p38-MK2-dependent manner since an increased affinity of TTP to IL-6 mRNA is observed in a p38α-null background. Taken together, we propose that TTP downregulates IL-6 gene expression at the post-transcriptional level by targeting the 3′UTR.
Materials and Methods
TTP−/− mice were generated as previously described (Taylor and others 1996). Genotyping of offspring was performed by polymerase chain reaction (PCR) analysis of tail DNA using primers as described (Taylor and others 1996). All mice were maintained in autoclaved microisolator cages in a barrier facility. All animal care and experiments were in accordance with the University of Michigan institutional guidelines for animal use.
MEFs were derived from wild-type, p38α−/−, and TTP−/− mice. The establishment of MEFs has been previously described (Zhao and others 2008). Cells were grown in Dulbecco's minimal essential medium supplemented with 10% fetal calf serum, 2 mM glutamine, 100 U of penicillin per mL, and 100 mg of streptomycin per mL, and incubated at 37°C in 5% CO2. The MEFs were transfected using Lipofectamine Plus Reagent (Invitrogen) according to the manufacturer's protocol. Cells were stimulated with IL-1β (1 ng/mL) for the indicated times.
IL-6 enzyme-linked immunosorbent assay system and recombinant mouse IL-1β were purchased from R&D Systems. The dual-Luciferase Reporter Assay System was purchased from Promega. SB203580 and actinomycin D were from Calbiochem and Invitrogen, respectively. Assays-on-Demand Gene Expression Products (mIL-6 and mGAPDH) and TaqMan Universal PCR Master Mix were from Applied Biosystems.
pcDNA3-p38α, -p38AF, -MKK3E, and -MKK3E were gifts from J. Han (Scripps Institute, La Jolla, CA). 3′-UTR of mIL-6 was amplified by PCR using primers terminating in XbaI recognition sequences. The establishment of full-length pGL3 IL-6 3′UTR, truncations, and mutants has been described previously (Zhao and others 2008).
Luciferase activity was determined using a luciferase assay system, following the manufacturer's protocol (Promega Corp.). Briefly, cell monolayers in 12-well plates were removed by scraping into 200 μL of reporter lysis buffer. Cells were vortexed and cellular debris removed by centrifugation (30 s at 12,000 ×g). Luciferase activity was measured using an LMax II 384 (Molecular Devices). A Renilla luciferase reporter vector (pEF-1 R-Luc) was included in every experiment as a transfection efficiency control. Relative luciferase activity was determined and normalized to Renilla luciferase activity as previously described (Zhao and others 2008).
IL-6 mRNA expression was analyzed by reverse transcription (RT)-PCR and Real-time PCR. First-strand cDNA was synthesized from RNA (600 ng) using SuperScript® III Reverse Transcriptase (Invitrogen). First-strand cDNA was used for PCR with specific oligonucleotide primers for mIL-6 (forward, 5′ATGAAGTTCCTCTCTGCAAGAGACT3′; reverse, 5′CACTAGGTTTGCCGAGTAGATCTC3′)and Real-time PCR with primers designed by Applied Biosystems (mIL-6, mm00446190; mGAPDH, mm99999915).
MEFs were transfected with 100 nM siRNA using Lipofectamine 2000. After 24 h, cells were re-plated and transfected again for another 24 h. Scrambled control siRNAs were purchased from Ambion.
Immunoprecipitation of endogenous RNA-protein complexes was described previously. Cytoplasmic lysates, prepared from wild-type and p38−/− MEFs, were incubated (16 h, 4°C) with 100 μL of a 50% (vol/vol) suspension of protein A-Sepharose beads precoated with 30ug each of rabbit IgG1 or rabbit anti-TTP (Santa Cruz Biotechnology). The beads were washed 5 times with cytoplasmic lysis buffer (20 mM Tris-Hcl [pH7.5], 100 mM KCl, 5 mM MgCl2, 0.3% IGEPAL CA-630, and RNASEOUT [1,000U/mL]). RNA was extracted using phenol and chloroform and precipitated in ethanol. The RNA isolated from immunoprecipitaion (IP) material was reverse transcribed using oligo(dT) primer. Amplicon primers were used for murine IL-6 (accession no. NM_031168.1; forward 5′-atgaagttcctctctgcaagagact-3′ and reverse 5′-cactaggtttgccgagtagatctc-3′) and murine GAPDH (accession no. NM_008084; forward 5′-caccatggagaaggccgggg-3′ and reverse 5′-gacggacacattgggggtag-3′). PCR products were run on a 1% agarose gel containing 0.5 μg/mL ethidium bromide.
To investigate the function of TTP in vivo, primary MEFs were prepared from wild-type (TTP+/+) and TTP−/− embryos, and stimulated with IL-1β for 24 h. IL-6 production from culture supernatants was examined by enzyme-linked immunosorbent assay (Fig. 1A). Remarkably, TTP−/− MEFs produced a 2-fold increase of IL-6 compared with wild-type counterparts, in the presence or absence of IL-1β. To verify that TTP downregulates IL-6 production, TTP was downregulated by siRNA and overexpressed in MEF cells. Two different siRNAs were used to target TTP, thereby reducing TTP expression to about 50% of its original level by RT-PCR (data not shown). IL-6 production was decreased by overexpression of TTP (Fig. 1B), and increased by silencing TTP (Fig. 1C). These results indicate that TTP inhibits IL-6 production.
The destabilizing effect of TTP on its target mRNA is associated with the direct binding of TTP via cis-elements at the 3′UTR of the target mRNA. To investigate the mechanism by which TTP regulates IL-6 production, the IL-6 mRNA level was compared between wild-type and TTP−/− MEFs. Total mRNA of wild-type and TTP−/− MEFs were collected after 24 h of IL-1β treatment, and IL-6 mRNA levels were examined by real-time PCR. In TTP−/− MEFs, IL-6 mRNA was upregulated compared with wild-type MEFs (Fig. 2A). To examine the significance of the IL-6 3′UTR, wild-type and TTP−/− MEFs were transiently transfected with control and IL-6 3′UTR reporter constructs (Fig. 2B). TTP−/− MEFs consistently had significantly higher (P<0.05) luciferase activity than wild-type cells. To determine whether TTP regulates IL-6 mRNA turnover, we investigated the half-life of endogenous IL-6 mRNA from wild-type and TTP−/− MEFs (Fig. 2C). After 24 h of IL-1β treatment, Actinomycin D was added to MEFs and IL-6 mRNA level was measured by Real-Time PCR at indicated time points. Figure 2C shows a relatively longer half-life in TTP−/− MEFs (t1/2=5.69 h) than in wild-type cells (t1/2=2.55 h). Differences in mRNA half-life reached significance at 3 h (P=0.0347). These data indicate that IL-6 mRNA was stabilized by TTP.
Activation of the p38-MAPK pathway has previously been reported to inhibit TTP and thereby stabilizes ARE-mRNA (Stoecklin and others 2004). Constitutive activation of p38 by MKK3(E) induced a 2-fold increase of luciferase activity in RAW macrophages, whereas the dominant negative MEKK(A) showed no change (Fig. 3A). Overexpression of TTP reduced the reporter-gene activity by 50% compared with the control (pcDNA3). This reduction was abrogated by co-transfection with constitutively active MEKK3(E) but not MEKK(A). These results indicate that activation of the p38 MAPK pathway blocks the TTP-mediated downregulation of IL-6 3′UTR.
To further investigate the role of p38 in TTP regulation, TTP+/+ and TTP−/− MEFs were transiently transfected with pGL3 promoter or pGL3-IL6-3′-UTR luciferase reporter genes, and Renilla luciferase (pEF-RLuc) vector as a control for transfection efficiency. In wild-type cells expressing TTP, the p38 inhibitor significantly decreased IL6 reporter activity, whereas in TTP−/− MEFs this effect of p38 was not observed (Fig. 3B). These findings are consistent with a role for p38 in TTP-mediated IL-6 3′UTR luciferase activity. To investigate whether p38 regulates TTP-mediated IL-6 mRNA stability, TTP+/+ and TTP−/− MEFs were stimulated by IL-1β for 24 h followed by incubation with Actinomycin D to arrest ongoing mRNA transcription. The mRNA level of IL-6 was measured by quantitative real-time PCR. Compared with TTP−/− MEFs, TTP+/+ showed reduced stability of IL-6 mRNA, which was amplified in the presence of the p38 inhibitor (Fig. 3C). The half-life of TTP+/+ MEFs is 2.5 h, TTP−/− MEFs is 5.8 h, TTP+/++SB is 1.4 h, and TTP−/− MEFs+SB is 3.6 h. There is a significant difference between TTP+/+ and TTP−/− MEFs, and between TTP+/+ MEFs and TTP+/+ MEFs +SB, but no significant difference between TTP KO and TTP KO+SB. Together, these results show that p38MAPK inhibits TTP-induced downregulation of IL-6 mRNA.
The 3′UTR of IL-6 contains 5 AREs. Since AREs in the 3′-UTR of many cytokine mRNAs are responsible for both mRNA stability and translational control, we examined whether TTP targets the 3′-UTR of IL-6. The full-length 3′UTR of IL-6 was inserted downstream of the luciferase reporter-gene (Zhao and others 2008). Additionally, a series of luciferase reporter gene constructs, containing the various regions of IL-6 3′UTR and the motifs mutated from AUUUA to AGGGA, were generated (Zhao and others 2008).
pGL3-IL-6 3′UTR and control plasmid were transiently transfected into wild-type and TTP−/− MEFs (Fig. 4A). Luciferase activity of the reporter gene with IL-6 3′UTR was increased more than 2-fold in TTP−/− MEFs compared with wild-type MEFs. Overexpression of TTP in wild-type MEFs resulted in a dramatic decrease (∼90%) of luciferase expression of pGL3-IL-6 3′UTR. The luciferase activity of both pGL3-IL-6 3′UTR(56–173) and pGL3-IL-6 3′UTR (172–403) was only reduced ∼50% of control, whereas the decreased expression was abrogated in pGL3-IL-6 3′UTR(1–70), which includes none of the AREs. These findings suggested that TTP represses IL-6 3′UTR luciferase activity in an ARE-dependent manner, and both proximal and distal regions are required for the full reduction.
The full-length IL6 3′UTR and all the mutants (Fig. 4A) were co-transfected with TTP or pcDNA3 in RAW cells. Overexpression of TTP reduced reporter activity of IL-6 3′UTR to 50% of parental control vector, whereas this reduction is completely lost with M2, M3, and M4. TTP reduced 26% of reporter activity with M1, whereas 50% with M5, similar to that observed with the wild-type IL6 3′UTR. These data strongly indicate that ARE5 is not required, whereas ARE2, ARE3, and ARE4 are essential for targeting TTP, and ARE1 is involved in this targeting.
Finally, we were interested to determine whether p38α signaling could regulate the ability of TTP to bind the IL-6 3′UTR. An immunoprecipitation (IP) assay was carried out under conditions that preserved endogenous RNP associations. Following RT-PCR analysis of the IP material employing IL-6 3′UTR specific oligomers, an IL-6 product was readily detected in the IP material obtained using an anti-TTP antibody in p38α−/− MEF cells stimulated by IL-1β, whereas only residual amplification was observed in wild-type MEF cells or serum control IP (Fig. 5). RT-PCR results from total RNA showed that actually p38α−/− MEF cells produced less IL-6 mRNA than that found in IL-1β stimulated wild-type cells. These data strongly indicate that TTP increases its ability to bind IL6 3′UTR in p38α−/− MEF cells.
Cells of the immune system keep tight control over the production of potentially harmful cytokines by repressing their expression at the post-transcriptional level. The ARE, located in the 3′UTR of many cytokines (eg, GM-CSF, TNFα, IL-2, IL-3, and IL-6) and other proinflammatory factors (eg, COX-2 and MMP-13), plays a major role in post-transcriptional repression (Bakheet and others 2003; Khabar and others 2005; Khabar 2010). AREs regulate mRNA stability via interactions with sequence-specific RNA-BPs, which influence 2 critical steps of mRNA decay: deadenylation and/or the subsequent 3′ to 5′ exonuclease-mediated degradation. Despite the knowledge that over 20 different proteins can bind to ARE segments, only a subset of these RNA-BPs has been shown to influence the stability or translational efficiency of their target mRNAs. TTP and TTP-related proteins, BRF1 and BRF2, have a major regulatory role in controlling cytokine mRNAs (Stoecklin and others 2002; Raineri and others 2004; Lykke-Andersen and Wagner 2005). The present study expands this basic information to show that TTP regulates IL-1β-induced IL-6 expression through interactions with multiple IL-6 ARE elements in a p38 MAPK-dependent manner.
The function of TTP was elucidated through several studies using TTP-deficient mice (Varnum and others 1991). TTP−/− mice were shown to develop a generalized inflammatory condition, including an arthritic-like syndrome secondary to increased TNFα and GM-CSF levels (Taylor and others 1996). In TTP−/− mice, the increased cytokine production was shown to be a result of increased mRNA stability (Carballo and others 1998, 2000). In this study, MEF cells were established from TTP+/+ and TTP−/− mouse embryos to examine the direct role of TTP in IL-6 regulation. Consistent with previous observations, IL-6 expression is not elevated in TTP−/− MEFs until stimulated with IL-1β where significantly more IL-6 production was observed versus TTP+/+ MEFs. Similarly, data shown in this report indicate that siRNA against TTP increased inducible IL-6 expression. Recently, our research group has shown a similar effect with regard to IL-6 expression in oral cancer cells where TTP is silenced (Van Tubergen and others 2010). Nonphosphorylated TTP usually binds to mRNAs to promote rapid degradation. Overexpression studies have confirmed that TTP as well as TTP family members, BRF1 and BRF2, induce the degradation of mRNAs containing cytokine AREs (Jiang and others 2002; Stoecklin and others 2003; Sully and others 2004). Data from the present study is consistent with these observations where TTP overexpression decreases IL-1β-stimulated IL-6 expression. Consistent with TTP overexpression data, we observed that IL-1β-induced IL-6 mRNA was significantly more expressed in TTP-deficient cells with an increased half-life of the IL-6 mRNA.
The p38 MAPK pathways have been shown in a variety of systems to be an integral signaling component involved with cytokine mRNA stability (Winzen and others 1999). Previous data from our group have indicated that IL-6 regulation is highly dependent on p38 MAPK signaling in a variety of cell types (Patil and others 2004, 2006; Rossa and others 2006, 2008; Kirkwood and others 2007; Zhao and others 2008). The clinical significance of this regulation was also demonstrated through inhibition of inflammation and bone loss using small molecule inhibitors against p38 MAPK (Kirkwood and others 2007) and more recently using siRNA strategies targeting the p38 downstream kinase, MK2 (Li and others 2011). As part of these studies, we demonstrated that activation of p38 MAPK via overexpression of a constitutively active form of MAPK Kinase-3 (MKK3E) was able to induce IL-6 ARE reporter activity compared with the dominant negative form of MKK3 (MKK3A) but when TTP was co-expressed with MKK3A then TTP was able to repress the inductive capacity of MKK3E. Additionally, in TTP-deficient cells IL-6 ARE reporter activity was lost in the presence of a p38 MAPK inhibitor, suggesting that TTP effects on IL-6 are highly dependent upon the phosphorylation status of TTP. We also demonstrated that the these effects were not limited to the ARE reporter since IL-6 mRNA was not affected in TTP-deficient cells treated with a p38 MAPK inhibitor compared with wild-type cells. We conclude from these studies that the TTP directs mRNA stability of IL-6 largely in a p38 MAPK-dependent manner.
There are 5 AREs within the 3′UTR of the IL-6 mRNA that contribute toward the IL-6 mRNA stability. Previous data from our group have defined several p38 MAPK-dependent AREs within the 3′UTR of the IL-6 mRNA (Zhao and others 2008). In these studies, multiple ARE elements were found to be p38 dependent in reporter transactivation and mRNA decay studies. The present study extends this information to show that TTP can only reduce IL-6 ARE reporter activity with the reporter constructs that contain ARE cis elements within the reporter. Compared with vector control, TTP reduced ARE reporter activity in both proximal (IL-656–173) and distal (IL-6172–403) reporters but not reporters that do not contain an ARE (IL-61–70). Using site-directed mutagenesis, AREs 1–5 have been independently eliminated of each of the IL-6 ARE elements. Deletion or mutation of AUUUA motifs could alter the components of mRNA-trans-factor complex and affect the luciferase activity of reporter gene containing the IL-6 3′-UTR with mutated AUUUA motifs. Using this approach, we identified ARE1, ARE2, and ARE5 as the cis-elements regulated by p38α in IL-6–3′-UTR (Zhao and others 2008). In those studies, mutation of ARE1 and ARE2 resulted in the enhanced expression due to the deficiency of p38α phosphorylation, whereas mutation of ARE5 decreased the luciferase reporter expression in the presence of p38α, indicating that p38α is required for the ARE1 and ARE2 to repress expression and for ARE5 to enhance expression. Data from the present study indicate that ARE2, ARE3, and ARE4 are necessary for TTP to repress IL-6 3′UTR expression. Thus, although previous data suggest that ARE5 may be the most important ARE target of IL-6 regulation in a p38 MAPK-dependent manner, different ARE elements are required for TTP-mediated decay of the IL-6 mRNA. However, we cannot directly conclude this based upon the data presented here and ongoing studies are being directed toward understanding the molecular nature of ARE2, 3, and 4 and TTP interaction.
Molecular action of TTP involves phosphorylation and cytoplasmic localization. TTP binds to AREs of cytokine genes and targets them to the exosome for rapid degradation (Lai and others 1999; Chen and others 2001). p38/MK2 signaling is required for TTP phosphorylation (Carballo and others 2001; Mahtani and others 2001; Zhu and others 2001), which promotes nuclear export of TTP, an event that is partially dependent upon binding to 14–3-3 proteins, through phosphoserine residues (Johnson and others 2002). Additionally, 14–3-3 inhibits the activity of TTP by preventing TTP association with stress granules where ARE-mRNA decay occurs (Stoecklin and others 2004). Taken together, these data support the importance of TTP cytoplasmic localization and highlight the complexity of cytokine regulation and importance of spatially separate mRNA pools within the cytoplasm. To help delineate the role of TTP to interact with IL-6 3′UTR within the cytoplasm, RNA immunoprecipitation experiments were conducted. Data from these experiments suggest that in IL-1β-stimulated cells, there is a higher affinity for TTP to interact with IL-6 mRNA in the absence of p38 MAPK. Collectively, all of these data indicate the IL-6 mRNA stability is regulated by TTP through a change in affinity for the transcript that occurs in a p38 MAPK-dependent manner and involves specific AREs within the 3′UTR of the IL-6 mRNA.
This work was supported by Department of Defense W81XWH-05-1-0075, NIH R21DE017966, R01DE018290, R01DE018512, K02 DE019513-01, and P20RR017696.
Author Disclosure Statement
The authors disclose that they do not have any commercial associations that might cause a conflict of interest in connection with submitted article.
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