University at Buffalo - The State University of New York
Skip to Content
Wanding Zhou[author] - PubMed - NCBI
Format
Sort by
Items per page

Send to

Choose Destination

Search results

Items: 19

1.

The genomic landscape of tuberous sclerosis complex.

Martin KR, Zhou W, Bowman MJ, Shih J, Au KS, Dittenhafer-Reed KE, Sisson KA, Koeman J, Weisenberger DJ, Cottingham SL, DeRoos ST, Devinsky O, Winn ME, Cherniack AD, Shen H, Northrup H, Krueger DA, MacKeigan JP.

Nat Commun. 2017 Jun 15;8:15816. doi: 10.1038/ncomms15816.

2.

Comprehensive evaluation of extracellular small RNA isolation methods from serum in high throughput sequencing.

Guo Y, Vickers K, Xiong Y, Zhao S, Sheng Q, Zhang P, Zhou W, Flynn CR.

BMC Genomics. 2017 Jan 7;18(1):50. doi: 10.1186/s12864-016-3470-z.

3.

Comprehensive characterization, annotation and innovative use of Infinium DNA methylation BeadChip probes.

Zhou W, Laird PW, Shen H.

Nucleic Acids Res. 2017 Feb 28;45(4):e22. doi: 10.1093/nar/gkw967.

4.

novoBreak: local assembly for breakpoint detection in cancer genomes.

Chong Z, Ruan J, Gao M, Zhou W, Chen T, Fan X, Ding L, Lee AY, Boutros P, Chen J, Chen K.

Nat Methods. 2017 Jan;14(1):65-67. doi: 10.1038/nmeth.4084. Epub 2016 Nov 28.

5.

Vitamin C increases viral mimicry induced by 5-aza-2'-deoxycytidine.

Liu M, Ohtani H, Zhou W, Ørskov AD, Charlet J, Zhang YW, Shen H, Baylin SB, Liang G, Grønbæk K, Jones PA.

Proc Natl Acad Sci U S A. 2016 Sep 13;113(37):10238-44. doi: 10.1073/pnas.1612262113. Epub 2016 Aug 29.

6.

Hotspot mutations delineating diverse mutational signatures and biological utilities across cancer types.

Chen T, Wang Z, Zhou W, Chong Z, Meric-Bernstam F, Mills GB, Chen K.

BMC Genomics. 2016 Jun 23;17 Suppl 2:394. doi: 10.1186/s12864-016-2727-x.

7.

TransVar: a multilevel variant annotator for precision genomics.

Zhou W, Chen T, Chong Z, Rohrdanz MA, Melott JM, Wakefield C, Zeng J, Weinstein JN, Meric-Bernstam F, Mills GB, Chen K.

Nat Methods. 2015 Nov;12(11):1002-3. doi: 10.1038/nmeth.3622. No abstract available.

8.

An integrated map of structural variation in 2,504 human genomes.

Sudmant PH, Rausch T, Gardner EJ, Handsaker RE, Abyzov A, Huddleston J, Zhang Y, Ye K, Jun G, Fritz MH, Konkel MK, Malhotra A, Stütz AM, Shi X, Casale FP, Chen J, Hormozdiari F, Dayama G, Chen K, Malig M, Chaisson MJP, Walter K, Meiers S, Kashin S, Garrison E, Auton A, Lam HYK, Mu XJ, Alkan C, Antaki D, Bae T, Cerveira E, Chines P, Chong Z, Clarke L, Dal E, Ding L, Emery S, Fan X, Gujral M, Kahveci F, Kidd JM, Kong Y, Lameijer EW, McCarthy S, Flicek P, Gibbs RA, Marth G, Mason CE, Menelaou A, Muzny DM, Nelson BJ, Noor A, Parrish NF, Pendleton M, Quitadamo A, Raeder B, Schadt EE, Romanovitch M, Schlattl A, Sebra R, Shabalin AA, Untergasser A, Walker JA, Wang M, Yu F, Zhang C, Zhang J, Zheng-Bradley X, Zhou W, Zichner T, Sebat J, Batzer MA, McCarroll SA; 1000 Genomes Project Consortium, Mills RE, Gerstein MB, Bashir A, Stegle O, Devine SE, Lee C, Eichler EE, Korbel JO.

Nature. 2015 Oct 1;526(7571):75-81. doi: 10.1038/nature15394.

9.

ClinSeK: a targeted variant characterization framework for clinical sequencing.

Zhou W, Zhao H, Chong Z, Mark RJ, Eterovic AK, Meric-Bernstam F, Chen K.

Genome Med. 2015 Mar 31;7(1):34. doi: 10.1186/s13073-015-0155-1. eCollection 2015.

10.

Clinical actionability enhanced through deep targeted sequencing of solid tumors.

Chen K, Meric-Bernstam F, Zhao H, Zhang Q, Ezzeddine N, Tang LY, Qi Y, Mao Y, Chen T, Chong Z, Zhou W, Zheng X, Johnson A, Aldape KD, Routbort MJ, Luthra R, Kopetz S, Davies MA, de Groot J, Moulder S, Vinod R, Farhangfar CJ, Shaw KM, Mendelsohn J, Mills GB, Eterovic AK.

Clin Chem. 2015 Mar;61(3):544-53. doi: 10.1373/clinchem.2014.231100. Epub 2015 Jan 27.

11.

Functional consequence of the MET-T1010I polymorphism in breast cancer.

Liu S, Meric-Bernstam F, Parinyanitikul N, Wang B, Eterovic AK, Zheng X, Gagea M, Chavez-MacGregor M, Ueno NT, Lei X, Zhou W, Nair L, Tripathy D, Brown PH, Hortobagyi GN, Chen K, Mendelsohn J, Mills GB, Gonzalez-Angulo AM.

Oncotarget. 2015 Feb 20;6(5):2604-14.

12.

Towards accurate characterization of clonal heterogeneity based on structural variation.

Fan X, Zhou W, Chong Z, Nakhleh L, Chen K.

BMC Bioinformatics. 2014 Sep 8;15:299. doi: 10.1186/1471-2105-15-299.

13.

Bias from removing read duplication in ultra-deep sequencing experiments.

Zhou W, Chen T, Zhao H, Eterovic AK, Meric-Bernstam F, Mills GB, Chen K.

Bioinformatics. 2014 Apr 15;30(8):1073-1080. Epub 2014 Jan 2.

14.

The involvement of NADPH oxidase-mediated ROS in cytokine secretion from macrophages induced by Mycobacterium tuberculosis ESAT-6.

Liu W, Peng Y, Yin Y, Zhou Z, Zhou W, Dai Y.

Inflammation. 2014 Jun;37(3):880-92. doi: 10.1007/s10753-013-9808-7.

PMID:
24408010
15.

Modeling integrated cellular machinery using hybrid Petri-Boolean networks.

Berestovsky N, Zhou W, Nagrath D, Nakhleh L.

PLoS Comput Biol. 2013;9(11):e1003306. doi: 10.1371/journal.pcbi.1003306. Epub 2013 Nov 7.

16.

Quantifying and assessing the effect of chemical symmetry in metabolic pathways.

Zhou W, Nakhleh L.

J Chem Inf Model. 2012 Oct 22;52(10):2684-96. doi: 10.1021/ci300259u. Epub 2012 Sep 28.

PMID:
22985501
17.

Convergent evolution of modularity in metabolic networks through different community structures.

Zhou W, Nakhleh L.

BMC Evol Biol. 2012 Sep 14;12:181. doi: 10.1186/1471-2148-12-181.

18.

The strength of chemical linkage as a criterion for pruning metabolic graphs.

Zhou W, Nakhleh L.

Bioinformatics. 2011 Jul 15;27(14):1957-63. doi: 10.1093/bioinformatics/btr271. Epub 2011 May 5.

19.

Properties of metabolic graphs: biological organization or representation artifacts?

Zhou W, Nakhleh L.

BMC Bioinformatics. 2011 May 4;12:132. doi: 10.1186/1471-2105-12-132.

Supplemental Content

Loading ...
Support Center