University at Buffalo - The State University of New York
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Ruiqiang Li[author] - PubMed - NCBI
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Items: 1 to 20 of 84

1.

Scallop genome provides insights into evolution of bilaterian karyotype and development.

Wang S, Zhang J, Jiao W, Li J, Xun X, Sun Y, Guo X, Huan P, Dong B, Zhang L, Hu X, Sun X, Wang J, Zhao C, Wang Y, Wang D, Huang X, Wang R, Lv J, Li Y, Zhang Z, Liu B, Lu W, Hui Y, Liang J, Zhou Z, Hou R, Li X, Liu Y, Li H, Ning X, Lin Y, Zhao L, Xing Q, Dou J, Li Y, Mao J, Guo H, Dou H, Li T, Mu C, Jiang W, Fu Q, Fu X, Miao Y, Liu J, Yu Q, Li R, Liao H, Li X, Kong Y, Jiang Z, Chourrout D, Li R, Bao Z.

Nat Ecol Evol. 2017 Apr 3;1(5):120. doi: 10.1038/s41559-017-0120.

PMID:
28812685
2.

Genomic data for 78 chickens from 14 populations.

Li D, Che T, Chen B, Tian S, Zhou X, Zhang G, Li M, Gaur U, Li Y, Luo M, Zhang L, Xu Z, Zhao X, Yin H, Wang Y, Jin L, Tang Q, Xu H, Yang M, Zhou R, Li R, Zhu Q, Li M.

Gigascience. 2017 Jun 1;6(6):1-5. doi: 10.1093/gigascience/gix026.

3.

Genetic Alterations in Esophageal Tissues From Squamous Dysplasia to Carcinoma.

Liu X, Zhang M, Ying S, Zhang C, Lin R, Zheng J, Zhang G, Tian D, Guo Y, Du C, Chen Y, Chen S, Su X, Ji J, Deng W, Li X, Qiu S, Yan R, Xu Z, Wang Y, Guo Y, Cui J, Zhuang S, Yu H, Zheng Q, Marom M, Sheng S, Zhang G, Hu S, Li R, Su M.

Gastroenterology. 2017 Jul;153(1):166-177. doi: 10.1053/j.gastro.2017.03.033. Epub 2017 Mar 30.

PMID:
28365443
4.

The genetics of tiger pelage color variations.

Xu X, Dong GX, Schmidt-Küntzel A, Zhang XL, Zhuang Y, Fang R, Sun X, Hu XS, Zhang TY, Yang HD, Zhang DL, Marker L, Jiang ZF, Li R, Luo SJ.

Cell Res. 2017 Jul;27(7):954-957. doi: 10.1038/cr.2017.32. Epub 2017 Mar 10. No abstract available.

PMID:
28281538
5.

The Jujube Genome Provides Insights into Genome Evolution and the Domestication of Sweetness/Acidity Taste in Fruit Trees.

Huang J, Zhang C, Zhao X, Fei Z, Wan K, Zhang Z, Pang X, Yin X, Bai Y, Sun X, Gao L, Li R, Zhang J, Li X.

PLoS Genet. 2016 Dec 22;12(12):e1006433. doi: 10.1371/journal.pgen.1006433. eCollection 2016 Dec.

6.

Single-cell exome sequencing identifies mutations in KCP, LOC440040, and LOC440563 as drivers in renal cell carcinoma stem cells.

Li C, Wu S, Yang Z, Zhang X, Zheng Q, Lin L, Niu Z, Li R, Cai Z, Li L.

Cell Res. 2017 Apr;27(4):590-593. doi: 10.1038/cr.2016.150. Epub 2016 Dec 16. No abstract available.

7.

pBACode: a random-barcode-based high-throughput approach for BAC paired-end sequencing and physical clone mapping.

Wei X, Xu Z, Wang G, Hou J, Ma X, Liu H, Liu J, Chen B, Luo M, Xie B, Li R, Ruan J, Liu X.

Nucleic Acids Res. 2017 Apr 20;45(7):e52. doi: 10.1093/nar/gkw1261.

8.

Comprehensive variation discovery and recovery of missing sequence in the pig genome using multiple de novo assemblies.

Li M, Chen L, Tian S, Lin Y, Tang Q, Zhou X, Li D, Yeung CKL, Che T, Jin L, Fu Y, Ma J, Wang X, Jiang A, Lan J, Pan Q, Liu Y, Luo Z, Guo Z, Liu H, Zhu L, Shuai S, Tang G, Zhao J, Jiang Y, Bai L, Zhang S, Mai M, Li C, Wang D, Gu Y, Wang G, Lu H, Li Y, Zhu H, Li Z, Li M, Gladyshev VN, Jiang Z, Zhao S, Wang J, Li R, Li X.

Genome Res. 2017 May;27(5):865-874. doi: 10.1101/gr.207456.116. Epub 2016 Sep 19.

9.

Reply to 'Olfactory genes in Tibetan wild boar (NG-CR42819)'.

Li M, Yeung CK, Tian S, Zhou X, Lin Y, Li X, Li R.

Nat Genet. 2016 Aug 30;48(9):973-4. doi: 10.1038/ng.3639. No abstract available.

PMID:
27573683
10.

Population Genomics Reveals Low Genetic Diversity and Adaptation to Hypoxia in Snub-Nosed Monkeys.

Zhou X, Meng X, Liu Z, Chang J, Wang B, Li M, Wengel PO, Tian S, Wen C, Wang Z, Garber PA, Pan H, Ye X, Xiang Z, Bruford MW, Edwards SV, Cao Y, Yu S, Gao L, Cao Z, Liu G, Ren B, Shi F, Peterfi Z, Li D, Li B, Jiang Z, Li J, Gladyshev VN, Li R, Li M.

Mol Biol Evol. 2016 Oct;33(10):2670-81. doi: 10.1093/molbev/msw150. Epub 2016 Aug 23.

PMID:
27555581
11.

Genomic Analyses Reveal Demographic History and Temperate Adaptation of the Newly Discovered Honey Bee Subspecies Apis mellifera sinisxinyuan n. ssp.

Chen C, Liu Z, Pan Q, Chen X, Wang H, Guo H, Liu S, Lu H, Tian S, Li R, Shi W.

Mol Biol Evol. 2016 May;33(5):1337-48. doi: 10.1093/molbev/msw017. Epub 2016 Jan 27.

12.

Characterization of Genomic Variants Associated with Scout and Recruit Behavioral Castes in Honey Bees Using Whole-Genome Sequencing.

Southey BR, Zhu P, Carr-Markell MK, Liang ZS, Zayed A, Li R, Robinson GE, Rodriguez-Zas SL.

PLoS One. 2016 Jan 19;11(1):e0146430. doi: 10.1371/journal.pone.0146430. eCollection 2016.

13.

Genetic responses to seasonal variation in altitudinal stress: whole-genome resequencing of great tit in eastern Himalayas.

Qu Y, Tian S, Han N, Zhao H, Gao B, Fu J, Cheng Y, Song G, Ericson PG, Zhang YE, Wang D, Quan Q, Jiang Z, Li R, Lei F.

Sci Rep. 2015 Sep 25;5:14256. doi: 10.1038/srep14256.

14.

MICA: A fast short-read aligner that takes full advantage of Many Integrated Core Architecture (MIC).

Luo R, Cheung J, Wu E, Wang H, Chan SH, Law WC, He G, Yu C, Liu CM, Zhou D, Li Y, Li R, Wang J, Zhu X, Peng S, Lam TW.

BMC Bioinformatics. 2015;16 Suppl 7:S10. doi: 10.1186/1471-2105-16-S7-S10. Epub 2015 Apr 23.

15.

The miRNA Transcriptome Directly Reflects the Physiological and Biochemical Differences between Red, White, and Intermediate Muscle Fiber Types.

Ma J, Wang H, Liu R, Jin L, Tang Q, Wang X, Jiang A, Hu Y, Li Z, Zhu L, Li R, Li M, Li X.

Int J Mol Sci. 2015 Apr 29;16(5):9635-53. doi: 10.3390/ijms16059635.

16.

Sequencing of allotetraploid cotton (Gossypium hirsutum L. acc. TM-1) provides a resource for fiber improvement.

Zhang T, Hu Y, Jiang W, Fang L, Guan X, Chen J, Zhang J, Saski CA, Scheffler BE, Stelly DM, Hulse-Kemp AM, Wan Q, Liu B, Liu C, Wang S, Pan M, Wang Y, Wang D, Ye W, Chang L, Zhang W, Song Q, Kirkbride RC, Chen X, Dennis E, Llewellyn DJ, Peterson DG, Thaxton P, Jones DC, Wang Q, Xu X, Zhang H, Wu H, Zhou L, Mei G, Chen S, Tian Y, Xiang D, Li X, Ding J, Zuo Q, Tao L, Liu Y, Li J, Lin Y, Hui Y, Cao Z, Cai C, Zhu X, Jiang Z, Zhou B, Guo W, Li R, Chen ZJ.

Nat Biotechnol. 2015 May;33(5):531-7. doi: 10.1038/nbt.3207. Epub 2015 Apr 20.

PMID:
25893781
17.

Reply to 'On genetic differentiation between domestic pigs and Tibetan wild boars'.

Li M, Yeung CK, Li Y, Tian S, Li X, Li R.

Nat Genet. 2015 Mar;47(3):192. doi: 10.1038/ng.3193. No abstract available.

PMID:
25711862
18.

Reply to 'Evolution of Tibetan wild boars'.

Li M, Li Y, Yeung CK, Tian S, Li X, Li R.

Nat Genet. 2015 Mar;47(3):189-90. doi: 10.1038/ng.3194. No abstract available.

PMID:
25711860
19.

Snapshot of structural variations in the Tibetan wild boar genome at single-nucleotide resolution.

Chen L, Jin L, Li M, Tian S, Che T, Tang Q, Lan J, Jiang Z, Li R, Gu Y, Li X, Wang J.

J Genet Genomics. 2014 Dec 20;41(12):653-7. doi: 10.1016/j.jgg.2014.10.001. Epub 2014 Oct 22. No abstract available.

PMID:
25527106
20.

Whole-genome sequencing of the snub-nosed monkey provides insights into folivory and evolutionary history.

Zhou X, Wang B, Pan Q, Zhang J, Kumar S, Sun X, Liu Z, Pan H, Lin Y, Liu G, Zhan W, Li M, Ren B, Ma X, Ruan H, Cheng C, Wang D, Shi F, Hui Y, Tao Y, Zhang C, Zhu P, Xiang Z, Jiang W, Chang J, Wang H, Cao Z, Jiang Z, Li B, Yang G, Roos C, Garber PA, Bruford MW, Li R, Li M.

Nat Genet. 2014 Dec;46(12):1303-10. doi: 10.1038/ng.3137. Epub 2014 Nov 2.

PMID:
25362486

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