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Items: 1 to 20 of 63

1.

Salivary mucins in host defense and disease prevention.

Frenkel ES, Ribbeck K.

J Oral Microbiol. 2015 Dec 22;7:29759. doi: 10.3402/jom.v7.29759. eCollection 2015.

2.

Absence of capsule reveals glycan-mediated binding and recognition of salivary mucin MUC7 by Streptococcus pneumoniae.

Thamadilok S, Roche-Håkansson H, Håkansson AP, Ruhl S.

Mol Oral Microbiol. 2016 Apr;31(2):175-88. doi: 10.1111/omi.12113. Epub 2015 Aug 17.

3.

Geographic distribution and adaptive significance of genomic structural variants: an anthropological genetics perspective.

Eaaswarkhanth M, Pavlidis P, Gokcumen O.

Hum Biol. 2014 Fall;86(4):260-75. Review.

PMID:
25959693
4.

The evolution and functional impact of human deletion variants shared with archaic hominin genomes.

Lin YL, Pavlidis P, Karakoc E, Ajay J, Gokcumen O.

Mol Biol Evol. 2015 Apr;32(4):1008-19. doi: 10.1093/molbev/msu405. Epub 2015 Jan 2.

5.

Salivary mucin 19 glycoproteins: innate immune functions in Streptococcus mutans-induced caries in mice and evidence for expression in human saliva.

Culp DJ, Robinson B, Cash MN, Bhattacharyya I, Stewart C, Cuadra-Saenz G.

J Biol Chem. 2015 Jan 30;290(5):2993-3008. doi: 10.1074/jbc.M114.597906. Epub 2014 Dec 15.

6.

The landscape of human STR variation.

Willems T, Gymrek M, Highnam G; 1000 Genomes Project Consortium, Mittelman D, Erlich Y.

Genome Res. 2014 Nov;24(11):1894-904. doi: 10.1101/gr.177774.114. Epub 2014 Aug 18.

7.

Beyond junk-variable tandem repeats as facilitators of rapid evolution of regulatory and coding sequences.

Gemayel R, Cho J, Boeynaems S, Verstrepen KJ.

Genes (Basel). 2012 Jul 26;3(3):461-80. doi: 10.3390/genes3030461.

8.

Deep conservation of human protein tandem repeats within the eukaryotes.

Schaper E, Gascuel O, Anisimova M.

Mol Biol Evol. 2014 May;31(5):1132-48. doi: 10.1093/molbev/msu062. Epub 2014 Feb 3.

9.

Muc5b is required for airway defence.

Roy MG, Livraghi-Butrico A, Fletcher AA, McElwee MM, Evans SE, Boerner RM, Alexander SN, Bellinghausen LK, Song AS, Petrova YM, Tuvim MJ, Adachi R, Romo I, Bordt AS, Bowden MG, Sisson JH, Woodruff PG, Thornton DJ, Rousseau K, De la Garza MM, Moghaddam SJ, Karmouty-Quintana H, Blackburn MR, Drouin SM, Davis CW, Terrell KA, Grubb BR, O'Neal WK, Flores SC, Cota-Gomez A, Lozupone CA, Donnelly JM, Watson AM, Hennessy CE, Keith RC, Yang IV, Barthel L, Henson PM, Janssen WJ, Schwartz DA, Boucher RC, Dickey BF, Evans CM.

Nature. 2014 Jan 16;505(7483):412-6. doi: 10.1038/nature12807. Epub 2013 Dec 8.

10.

MEGA6: Molecular Evolutionary Genetics Analysis version 6.0.

Tamura K, Stecher G, Peterson D, Filipski A, Kumar S.

Mol Biol Evol. 2013 Dec;30(12):2725-9. doi: 10.1093/molbev/mst197. Epub 2013 Oct 16.

11.

Primate genome architecture influences structural variation mechanisms and functional consequences.

Gokcumen O, Tischler V, Tica J, Zhu Q, Iskow RC, Lee E, Fritz MH, Langdon A, Stütz AM, Pavlidis P, Benes V, Mills RE, Park PJ, Lee C, Korbel JO.

Proc Natl Acad Sci U S A. 2013 Sep 24;110(39):15764-9. doi: 10.1073/pnas.1305904110. Epub 2013 Sep 6.

12.

Great ape genetic diversity and population history.

Prado-Martinez J, Sudmant PH, Kidd JM, Li H, Kelley JL, Lorente-Galdos B, Veeramah KR, Woerner AE, O'Connor TD, Santpere G, Cagan A, Theunert C, Casals F, Laayouni H, Munch K, Hobolth A, Halager AE, Malig M, Hernandez-Rodriguez J, Hernando-Herraez I, Prüfer K, Pybus M, Johnstone L, Lachmann M, Alkan C, Twigg D, Petit N, Baker C, Hormozdiari F, Fernandez-Callejo M, Dabad M, Wilson ML, Stevison L, Camprubí C, Carvalho T, Ruiz-Herrera A, Vives L, Mele M, Abello T, Kondova I, Bontrop RE, Pusey A, Lankester F, Kiyang JA, Bergl RA, Lonsdorf E, Myers S, Ventura M, Gagneux P, Comas D, Siegismund H, Blanc J, Agueda-Calpena L, Gut M, Fulton L, Tishkoff SA, Mullikin JC, Wilson RK, Gut IG, Gonder MK, Ryder OA, Hahn BH, Navarro A, Akey JM, Bertranpetit J, Reich D, Mailund T, Schierup MH, Hvilsom C, Andrés AM, Wall JD, Bustamante CD, Hammer MF, Eichler EE, Marques-Bonet T.

Nature. 2013 Jul 25;499(7459):471-5. doi: 10.1038/nature12228. Epub 2013 Jul 3.

13.

The Genotype-Tissue Expression (GTEx) project.

GTEx Consortium.

Nat Genet. 2013 Jun;45(6):580-5. doi: 10.1038/ng.2653.

14.

GenBank.

Benson DA, Cavanaugh M, Clark K, Karsch-Mizrachi I, Lipman DJ, Ostell J, Sayers EW.

Nucleic Acids Res. 2013 Jan;41(Database issue):D36-42. doi: 10.1093/nar/gks1195. Epub 2012 Nov 27.

15.

Exploring the role of copy number variants in human adaptation.

Iskow RC, Gokcumen O, Lee C.

Trends Genet. 2012 Jun;28(6):245-57. doi: 10.1016/j.tig.2012.03.002. Epub 2012 Apr 5. Review.

16.

The scientific exploration of saliva in the post-proteomic era: from database back to basic function.

Ruhl S.

Expert Rev Proteomics. 2012;9(1):85-96. doi: 10.1586/epr.11.80. Review.

17.

Control of mucin-type O-glycosylation: a classification of the polypeptide GalNAc-transferase gene family.

Bennett EP, Mandel U, Clausen H, Gerken TA, Fritz TA, Tabak LA.

Glycobiology. 2012 Jun;22(6):736-56. doi: 10.1093/glycob/cwr182. Epub 2011 Dec 18. Review.

18.

Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega.

Sievers F, Wilm A, Dineen D, Gibson TJ, Karplus K, Li W, Lopez R, McWilliam H, Remmert M, Söding J, Thompson JD, Higgins DG.

Mol Syst Biol. 2011 Oct 11;7:539. doi: 10.1038/msb.2011.75.

19.

Testing the ortholog conjecture with comparative functional genomic data from mammals.

Nehrt NL, Clark WT, Radivojac P, Hahn MW.

PLoS Comput Biol. 2011 Jun;7(6):e1002073. doi: 10.1371/journal.pcbi.1002073. Epub 2011 Jun 9.

20.

Refinement of primate copy number variation hotspots identifies candidate genomic regions evolving under positive selection.

Gokcumen O, Babb PL, Iskow RC, Zhu Q, Shi X, Mills RE, Ionita-Laza I, Vallender EJ, Clark AG, Johnson WE, Lee C.

Genome Biol. 2011;12(5):R52. doi: 10.1186/gb-2011-12-5-r52. Epub 2011 May 31.

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