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J Microbiol Methods. 2015 Jun;113:72-4. doi: 10.1016/j.mimet.2015.04.006. Epub 2015 Apr 21.

MyPro: A seamless pipeline for automated prokaryotic genome assembly and annotation.

Author information

1
Division of Biostatistics and Bioinformatics, Institute of Population Health Sciences, National Health Research Institutes, Miaoli County, Taiwan.
2
Department of Oral Biology, University at Buffalo, State University of New York, Buffalo, NY, USA.

Abstract

MyPro is a software pipeline for high-quality prokaryotic genome assembly and annotation. It was validated on 18 oral streptococcal strains to produce submission-ready, annotated draft genomes. MyPro installed as a virtual machine and supported by updated databases will enable biologists to perform quality prokaryotic genome assembly and annotation with ease.

KEYWORDS:

Annotation; Assembly; Bioinformatics; Prokaryote; Whole genome sequencing

PMID:
25911337
PMCID:
PMC4828917
DOI:
10.1016/j.mimet.2015.04.006
[Indexed for MEDLINE]
Free PMC Article
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